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+.. _docker:
+
+Running in docker
+=================
+
+Running the system in docker has many advantages:
+
+* Don't have to worry about getting dependencies- the system requires many libraries to be avaliable on the PATH
+
+* Isolation: we are running remote code supplied by anyone, which can potentially be very dangerous. Docker isolates the dangerous code, a significant security concern
+
+* Makes the system be able to be used in Windows- Smarker has been tested in docker for windows using WSL for the backend
+
+Using docker
+------------
+
+We have a ``Dockerfile`` ready for use: ``sudo docker build -t smarker .``
+
+To input files and get the output report we use docker volumes ``-v``. Unfortunately
+docker seems to be rather buggy passing through single files, so we recommend making
+a directory to pass through instead. 
+
+Command line arguments can be replaced with environment variables, using the ``-e``
+flag in a ``key=value`` format. There is the additional environment variable ``SMARKERDEPS``
+which will pip install pypi modules at the start, deliminated with commas.
+
+.. code-block:: bash
+    
+    sudo docker run \
+        -v "$(pwd)/../wsData.txt":/wsData.txt \
+        -v "$(pwd)/100301654.zip":/tmp/100301654.zip \
+        -v "$(pwd)/out/":/out/ \
+        -e submission=/tmp/100301654.zip \
+        -e assessment=example \
+        -e SMARKERDEPS=matplotlib \
+        -e format=pdf \
+        -e output=/out/100301654.pdf \
+        --rm smarker
+
+To list assessments in the database using docker:
+
+.. code-block:: bash
+    
+    sudo docker run -it --entrypoint python --rm smarker assessments.py --list yes
+\ No newline at end of file